PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG389700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 216aa    MW: 23598.1 Da    PI: 7.2192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG389700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-098302346
                         -HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                         +W++Ia++++ gRt++++k++w++
  Pavir.8KG389700.1.p  8 RWSKIASHLP-GRTDNEIKNYWRT 30
                         5*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75136IPR017930Myb domain
SuperFamilySSF466891.48E-7738IPR009057Homeodomain-like
CDDcd001672.28E-7830No hitNo description
PfamPF002492.2E-7830IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-11831IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKIVDACRWS KIASHLPGRT DNEIKNYWRT RVQKHAKQLN CDVNSKRFKD NMRFLWMPRL  60
AERAASAAAA HHSSPASSLQ HQRQQQAAAA AGGCFGFEMA TANAAADRSP SSVVTTTATN  120
SSPCSSRTTS SGASTAATAN DDDCWAAIQQ DHDEFWSAAS NLQQQLLYFP LAADLLPMQP  180
DLSGWVQGFS EGGSSSPDTT HQQQLWSLDD IWRMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG389700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284141e-59KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827780.12e-66transcription factor JAMYB-like
TrEMBLA0A2S3IFS24e-65A0A2S3IFS2_9POAL; Uncharacterized protein
TrEMBLA0A2T8IAC96e-66A0A2T8IAC9_9POAL; Uncharacterized protein
STRINGPavir.Hb00036.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5780922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-29myb domain protein 78