PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG391800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 163aa    MW: 16698.9 Da    PI: 11.0221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG391800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000385172223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C  Cg+sFs+   L  H  +H
  Pavir.8KG391800.1.p 51 RCRTCGRSFSTFQALGGHRTSH 72
                         8**********99998888877 PP
2zf-C2H216.13.2e-05101123123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg++F++   L  H+r+H
  Pavir.8KG391800.1.p 101 HRCNACGMVFPTGQALGGHMRRH 123
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.7835077IPR007087Zinc finger, C2H2
SMARTSM003550.395072IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.02E-751123No hitNo description
PfamPF139124.0E-95174IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139127.3E-11100125IPR007087Zinc finger, C2H2
SMARTSM003550.011101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGDVATTRNA PAASTANRLL LLLSLSLSPA SKVIAKRGSK RLGADDAGAL RCRTCGRSFS  60
TFQALGGHRT SHSRPRVRAD GLDLLLGTRP GKGGGAATDA HRCNACGMVF PTGQALGGHM  120
RRHRAAAALD VAALGTTIPV SSEQGDDENE AGHLSSTLIQ FI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG391800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827389.11e-61zinc finger protein ZAT7-like
TrEMBLA0A3L6PKM68e-67A0A3L6PKM6_PANMI; Zinc finger protein ZAT12-like
STRINGPavir.Hb00003.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.18e-14C2H2 family protein