PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG392400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 159aa    MW: 16575.7 Da    PI: 10.9467
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG392400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000314567123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cg+sF +   L  H  +H
  Pavir.8KG392400.1.p 45 FRCRTCGRSFATFQALGGHRTSH 67
                         89**********99998888777 PP
2zf-C2H216.23e-0596118123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg++F++   L  H+r+H
  Pavir.8KG392400.1.p  96 HRCNACGMVFPTGQALGGHMRRH 118
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-94468IPR007087Zinc finger, C2H2
SMARTSM003550.184567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.89E-845118No hitNo description
PROSITE profilePS5015711.0944572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139127.0E-1195120IPR007087Zinc finger, C2H2
PROSITE profilePS501579.30796118IPR007087Zinc finger, C2H2
SMARTSM003550.01196118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MATTARSSTA ADLLLYLSLS TASKVIGKGA GGGRRRRDRG ADGAFRCRTC GRSFATFQAL  60
GGHRTSHNRP RVRADGLDLL LGARPGKGGG AARDAHRCNA CGMVFPTGQA LGGHMRRHRA  120
AVLDVAAAVP ETTTTASSYS DNSDDEEGHL PIQLIQFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG392400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828381.13e-78zinc finger protein ZAT11-like
TrEMBLA0A2S3IFT96e-77A0A2S3IFT9_9POAL; Uncharacterized protein
STRINGPavir.Hb00056.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-19C2H2 family protein