PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG001600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 275aa    MW: 30235.6 Da    PI: 6.9411
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG001600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.29.3e-20115183359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.........EEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.........veitYegeHnhe 59 
                          Dgy+WrKYGqK+++g+ ++rsYYrCt +   gCp+k+ v+r+++  ++          +++Y geH+++
  Pavir.8NG001600.2.p 115 DGYQWRKYGQKQIEGAMYARSYYRCTWSteqGCPAKRTVQRNDDGDDIhggggapaeYTVVYMGEHTCT 183
                          9************************9877789**********964443222222222578888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-23107183IPR003657WRKY domain
SuperFamilySSF1182902.09E-20108183IPR003657WRKY domain
SMARTSM007741.6E-26113184IPR003657WRKY domain
PfamPF031063.9E-23115182IPR003657WRKY domain
PROSITE profilePS5081118.119115156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTLLAGLQQG DDELLTHGDE LLIILQSPMT TTMTPVVNNK VDDDQSGDGR RRRRPLGRSK  60
MRARRPQDDS KSSYNGEQRE DHRHSCKRRK NNKQRHKMMS GAATSVVITS VPDLDGYQWR  120
KYGQKQIEGA MYARSYYRCT WSTEQGCPAK RTVQRNDDGD DIHGGGGAPA EYTVVYMGEH  180
TCTPNDSMEA PFILETTAAA AFPVTSAGGS CRSSTSTTTS WAPAPAAASS LQELEDFTGP  240
IRSPVHIAAA DGWTIDHFLL LQLANDQPVS YFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15104182168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG001600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586204e-82KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808247.11e-76probable WRKY transcription factor 65 isoform X2
TrEMBLA0A2T7E4K41e-82A0A2T7E4K4_9POAL; Uncharacterized protein
STRINGPavir.J12092.1.p1e-168(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-15WRKY DNA-binding protein 55