PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG001800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 168aa    MW: 17812.8 Da    PI: 4.5229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG001800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.71.1e-231779359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE...EEEEEES--SS- CS
                 WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv...veitYegeHnhe 59
                         Dgy+WrKYGqK+++g+ ++rsYYrCt +   gCp+k+ v+r+++ + +    +++Y geH+++
  Pavir.8NG001800.1.p 17 DGYQWRKYGQKQIEGAMYARSYYRCTRSaeqGCPAKRTVQRNDDGGAApaeYTVVYMGEHTCT 79
                         9*************************988889**********96544322279********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.07E-211079IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-241179IPR003657WRKY domain
SMARTSM007743.8E-281580IPR003657WRKY domain
PfamPF031061.9E-241778IPR003657WRKY domain
PROSITE profilePS5081117.5461758IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSGGTSSVVI TSVPDLDGYQ WRKYGQKQIE GAMYARSYYR CTRSAEQGCP AKRTVQRNDD  60
GGAAPAEYTV VYMGEHTCTP NDSMEAPFIL ETTAAAVVPV ASSAGGSCCS STSWAPAPAA  120
ASSLQELEDF TGPIRSPVHI AAADGWTIDH FLLLQLANDQ PVSYFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17678168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG001800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586321e-100KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977390.15e-65probable WRKY transcription factor 58
TrEMBLA0A2T7E4I12e-69A0A2T7E4I1_9POAL; Uncharacterized protein
STRINGPavir.J20374.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-16WRKY DNA-binding protein 55