PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG001900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 270aa    MW: 30204.7 Da    PI: 5.6405
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG001900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.26.9e-18140186246
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTT CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpk 46 
                           Dgy+WrKYGqK+++g ++pr+YYrC+++  +C ++k +e++++++ 
  Pavir.8NG001900.1.p 140 YDGYQWRKYGQKNINGRQHPRNYYRCAYRerNCFATKTIEQQEQNNA 186
                          5***************************999**********998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-21125211IPR003657WRKY domain
SuperFamilySSF1182901.83E-17133211IPR003657WRKY domain
SMARTSM007742.1E-23139212IPR003657WRKY domain
PROSITE profilePS5081116.363141184IPR003657WRKY domain
PfamPF031063.7E-22141211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDRKSNLTLP PCGGHGSEML ETMRRQQELL MQLRALVLPV LHDTSSADIA AQLFDDVIGC  60
NVSVASKLEG CLIIMSTGTG DGPAQELVDD KPLARKRNST TTTGDSRTEE ETKPNNNSAD  120
QKRRRNDKRS RSLVTHVPHY DGYQWRKYGQ KNINGRQHPR NYYRCAYRER NCFATKTIEQ  180
QEQNNAGTSS AMAGVETAKY TVVYYGDHTC KDHSISMVQA PQPVNMDLQS GEIMAEATAN  240
VQEPEADLDL SSLLEVFDNS LVDWDDWKM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG001900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805423.11e-149probable WRKY transcription factor 46
TrEMBLA0A2T8KGM41e-161A0A2T8KGM4_9POAL; Uncharacterized protein
STRINGPavir.Ca00084.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-14WRKY family protein