PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG011000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 606aa    MW: 66164.7 Da    PI: 8.2718
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG011000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like703.8e-22200249353
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                          r+ Wt eLHe+F++a++ L G + AtP +i++lm+vkgLt +h+ SHLQk+
  Pavir.8NG011000.1.p 200 RVTWTVELHEKFLDAIDVL-GDNYATPEKIRKLMNVKGLTCKHISSHLQKH 249
                          99*****************.99***************************96 PP
2Response_reg35.74.5e-13131271107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTS.EHHHHHHHHHHHT...TTSEEEEEESTT CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgm.dGlellkeireee...pklpiivvtahg 81 
                          vl+ dD+p+   ++ ++l ++g+ +v  +++ e al+ +k +       Dl+l+D+ + ++  G+ + +e+  +     ++p+i + ah 
  Pavir.8NG011000.1.p  13 VLLLDDNPTSSWIISNMLVESGF-KVIPFQKVEMALDFVKSRAaieevLDLVLVDVHLRNIaPGSLANSELLHHIlneLQVPVITMCAHH 101
                          899********************.8999***********999999999*******9998843555555555333333468********** PP

                          THHHHHHHHHTTESEEEESS--HHHH CS
         Response_reg  82 eeedalealkaGakdflsKpfdpeel 107
                          +ee + e + +Ga  ++ Kp d + l
  Pavir.8NG011000.1.p 102 DEEALSENVALGACSYVLKPLDTASL 127
                          ********************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.68E-188139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.5E-1810142No hitNo description
SMARTSM004480.003811134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.10512135IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.3E-1013127IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.67E-1014127No hitNo description
PROSITE profilePS5129412.44195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-20196251IPR009057Homeodomain-like
SuperFamilySSF466898.15E-15199254IPR009057Homeodomain-like
PfamPF002491.2E-5200249IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.7E-18200252IPR006447Myb domain, plants
CDDcd131323.14E-94367604No hitNo description
TIGRFAMsTIGR007977.3E-46377604IPR002528Multi antimicrobial extrusion protein
PfamPF015542.1E-35377536IPR002528Multi antimicrobial extrusion protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006855Biological Processdrug transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MVEHHPVMGN LSVLLLDDNP TSSWIISNML VESGFKVIPF QKVEMALDFV KSRAAIEEVL  60
DLVLVDVHLR NIAPGSLANS ELLHHILNEL QVPVITMCAH HDEEALSENV ALGACSYVLK  120
PLDTASLNML KQKALEHKSK KATPQGPIPN RTKSGMVSSS TERLQEMLIL EGNNLSNPGN  180
SEFEVPEVEK AHGCSKKLDR VTWTVELHEK FLDAIDVLGD NYATPEKIRK LMNVKGLTCK  240
HISSHLQKHW SRKRNANQGG QHQRNASTKL VSELIGSGQT AATTESITPR VDADIREAYP  300
SRMWKQVKEE AALKTYNHTC TSGVSRDGTK SVWDEYQKAE ASASAATAAS LPLLLPRASP  360
RAAVGAEVRR QVGLAAPLVV CSLLQYSLQV VSVMFAGHLG ELSLSGASVA ASFANVTGFS  420
VLLGMGSALD TFCGQSYGAR QYNMLGTHTQ RAIIVLMLMG VLLAFILAFT GQIFISLGQN  480
PEISSEAGLY AQWLIPGLFA YGLLQCLTRF LQTQNIVQIL VVCSGLTLLL HIMLCWFLVQ  540
TFGLGHKGAA LAISISYWFN VALLAIYVKI SEAGRRSWKG WSMEAVRLKD VKGYMRLAIP  600
STFMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y50_A4e-5536760410245Protein DETOXIFICATION 14
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.138640.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG011000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813472.10.0two-component response regulator ARR2-like isoform X1
STRINGPavir.J00035.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-23response regulator 2