PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG016100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 419aa    MW: 46191.8 Da    PI: 4.6262
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG016100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1680140155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +    ++ k+ ++++lg ++t+e Aa+a++ a++k++g
  Pavir.8NG016100.1.p  80 SVYRGVTRHRWTGRFEAHLWDkHCLtslQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 140
                          78*******************9988888445445*************************98 PP
2AP2574.8e-18183235156
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Pavir.8NG016100.1.p 183 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 235
                          89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1780149IPR016177DNA-binding domain
PfamPF008474.3E-1480140IPR001471AP2/ERF domain
CDDcd000184.20E-1280149No hitNo description
SMARTSM003802.9E-2881154IPR001471AP2/ERF domain
PROSITE profilePS5103220.8981148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1781149IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-18183244IPR016177DNA-binding domain
PfamPF008471.6E-13183234IPR001471AP2/ERF domain
CDDcd000183.38E-25183244No hitNo description
SMARTSM003802.6E-24184248IPR001471AP2/ERF domain
PROSITE profilePS5103218.663184242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18184242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGMERSSQPS PPPPVSSPPS SSSSSISAEE IPQRKRARAH KGSRADKPKR PRKEAPRQTQ  60
TKDDPADPAA PNAAAAKRSS VYRGVTRHRW TGRFEAHLWD KHCLTSLQNK KKGRQVYLGA  120
YDTEEAAARA YDLAALKYWG PETVLNFPAE DYSGEMSEME GVSREEYLAS LRRRSSGFSR  180
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTFDTQEE AAKAYDLAAI EYRGANVVTN  240
FDISCYLDHP QLLAQLQQEP QVVPALNQEP QPDQSETTVQ ESDSSEVKTP DDIAKPDANA  300
QPDDSAEPLT VDDSAEPLTV NDSIYESLWS PCMDYELDIM SSSNFGSSIN LSEWFADADF  360
GSDIGCLFDG CFAVDEGSKD DVGLADFSLF DEGDGKQKDV ISDMEEGIHP STIISVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753PKRPRKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.300790.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG016100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807914.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2S3H5G50.0A0A2S3H5G5_9POAL; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-76AP2 family protein