PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG040400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 115aa MW: 13198.2 Da PI: 9.8532

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG040400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	4.1e-23	24	112	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk++s+k+k +g+i + +fvC +eg++ ++k++ + + +raetrt+C+ ++ + +++ +g+++vt+l leHnH+l+ Pavir.8NG040400.1.p 24 FWVSYGGQKGFEVRKRYSNKRKSDGKIRSCRFVCANEGHKMNDKRD-HLIKCPRAETRTDCQVRMGLILDRkKGNYKVTELILEHNHALQ 112 9***************************************9999.999***********9998888*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-18	24	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MDFPPSFLPQ IGMEFSSSDE AGMFWVSYGG QKGFEVRKRY SNKRKSDGKI RSCRFVCANE 60 GHKMNDKRDH LIKCPRAETR TDCQVRMGLI LDRKKGNYKV TELILEHNHA LQLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG040400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876513.1	8e-62	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A0N7KS91	3e-63	A0A0N7KS91_ORYSJ; Os10g0571900 protein (Fragment)
TrEMBL	Q7G1M5	4e-61	Q7G1M5_ORYSJ; Transposon protein, putative, unclassified, expressed
TrEMBL	Q8S7N0	4e-61	Q8S7N0_ORYSJ; Putative transposase
STRING	OS10T0571900-00	5e-64	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-15	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG040400.1.p