PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG054000.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 380aa MW: 42076.3 Da PI: 7.0409

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG054000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2e-11	75	103	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Pavir.8NG054000.3.p 75 KTIRRLAQNREAARKSRLRKKAYIQQLES 103 6789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-6	71	146	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.3E-8	73	116	No hit	No description
PROSITE profile	PS50217	8.956	73	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-7	75	109	No hit	No description
Pfam	PF00170	1.0E-8	75	108	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.0E-30	155	228	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MRSLHTPKKG SNLTADSTED SESSSKNNSN HSSDQHGATE NMVSQFDQGS QQQEIQHKNM 60 ATSYTTKSGK TLDPKTIRRL AQNREAARKS RLRKKAYIQQ LESSKLKLAQ MEQDMQRPRS 120 QGLFLGGTPG ANTSSGAAMF DVEYARWLDD HGRRMAELHG ALQAHLPDSD LRAIVDDALT 180 HHDELFQLKA MAAKSDVFHL ITGVWTTPAE RCFLWMGGFR PSDLLKTLLP QLDPLTEQQL 240 VGICNLQQSS QQAEEALSQG LEQLHQSLAD TMAGGSLIDD ANMSFMGQMA LALGKLSNLE 300 GFVIQADNLR QQTLHQMHRI LTVRQAARCF LAIGEYHNRL RALSSLWASR PREMLVTDEG 360 NCGEISIAAQ PSQSQFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MRSLHTPKKG SNLTADSTED SESSSKNNSN HSSDQHGATE NMVSQFDQGS QQQEIQHKNM  60
ATSYTTKSGK TLDPKTIRRL AQNREAARKS RLRKKAYIQQ LESSKLKLAQ MEQDMQRPRS  120
QGLFLGGTPG ANTSSGAAMF DVEYARWLDD HGRRMAELHG ALQAHLPDSD LRAIVDDALT  180
HHDELFQLKA MAAKSDVFHL ITGVWTTPAE RCFLWMGGFR PSDLLKTLLP QLDPLTEQQL  240
VGICNLQQSS QQAEEALSQG LEQLHQSLAD TMAGGSLIDD ANMSFMGQMA LALGKLSNLE  300
GFVIQADNLR QQTLHQMHRI LTVRQAARCF LAIGEYHNRL RALSSLWASR PREMLVTDEG  360
NCGEISIAAQ PSQSQFSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	1e-126	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG054000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828229.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2S3ICM0	0.0	A0A2S3ICM0_9POAL; Uncharacterized protein
STRING	Pavir.Ha01753.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG054000.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]