PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG054000.4.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 356aa MW: 39486.2 Da PI: 7.8519

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG054000.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.4e-12	51	79	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Pavir.8NG054000.4.p 51 KTIRRLAQNREAARKSRLRKKAYIQQLES 79 6789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-6	47	122	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.8E-8	49	92	No hit	No description
PROSITE profile	PS50217	8.956	49	93	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-7	51	85	No hit	No description
Pfam	PF00170	9.6E-9	51	84	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-30	131	204	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MNNNILISFI LLTNCALRFS NLHVVTCSCL LGMQNMATSY TTKSGKTLDP KTIRRLAQNR 60 EAARKSRLRK KAYIQQLESS KLKLAQMEQD MQRPRSQGLF LGGTPGANTS SGAAMFDVEY 120 ARWLDDHGRR MAELHGALQA HLPDSDLRAI VDDALTHHDE LFQLKAMAAK SDVFHLITGV 180 WTTPAERCFL WMGGFRPSDL LKTLLPQLDP LTEQQLVGIC NLQQSSQQAE EALSQGLEQL 240 HQSLADTMAG GSLIDDANMS FMGQMALALG KLSNLEGFVI QADNLRQQTL HQMHRILTVR 300 QAARCFLAIG EYHNRLRALS SLWASRPREM LVTDEGNCGE ISIAAQPSQS QFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MNNNILISFI LLTNCALRFS NLHVVTCSCL LGMQNMATSY TTKSGKTLDP KTIRRLAQNR  60
EAARKSRLRK KAYIQQLESS KLKLAQMEQD MQRPRSQGLF LGGTPGANTS SGAAMFDVEY  120
ARWLDDHGRR MAELHGALQA HLPDSDLRAI VDDALTHHDE LFQLKAMAAK SDVFHLITGV  180
WTTPAERCFL WMGGFRPSDL LKTLLPQLDP LTEQQLVGIC NLQQSSQQAE EALSQGLEQL  240
HQSLADTMAG GSLIDDANMS FMGQMALALG KLSNLEGFVI QADNLRQQTL HQMHRILTVR  300
QAARCFLAIG EYHNRLRALS SLWASRPREM LVTDEGNCGE ISIAAQPSQS QFSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	1e-49	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG054000.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828229.1	0.0	transcription factor TGAL4-like isoform X1
Refseq	XP_025828230.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2T7CKG4	0.0	A0A2T7CKG4_9POAL; Uncharacterized protein
STRING	Pavir.Ha01753.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG054000.4.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]