PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG057100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 463aa    MW: 48802.8 Da    PI: 9.0844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG057100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015224247123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C dC+++F   ++L+ H  + H
  Pavir.8NG057100.1.p 224 FPCADCDEVFGKAESLELHRASrH 247
                          89*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.078224252IPR007087Zinc finger, C2H2
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
SuperFamilySSF563996.62E-16249455No hitNo description
Gene3DG3DSA:3.90.228.101.4E-9251455IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MPCQTAMDVA SAARSSQGKG AAAAKKKMSR GAAKKTTTQP SWMAVGLGFY HSSSSGKNRA  60
QPAAAAAAAE GKNIDDDKSS SSTSKKKRSI IISRSMTCAR SICSTKESSV LSRRRDQDTD  120
RAAARSASSR SLRAPDVVDA ADATYAASAA AVSATSSFNS EATAATSSSA TATSASSPLS  180
SPSSSSFGSS FRGVQQIRKL SGCYECHSVF DPRSLAAAAA AAAFPCADCD EVFGKAESLE  240
LHRASRHAVS ELGPDDTSRN IVDIIFQSSW LRKQEAPVCK IDRILKVQSS DRTVRRFEEY  300
KESIKERARS GEGRKNNPRC VADGNELLRF HCTTFTCSLG AAGGTALCRA PLAQCKLCSI  360
VRDGFRVDGD GKIATMATSG HAHDMAQVSS DGEKKAMLVC RVVAGRVKKT GDRKSSEDSE  420
CDSVSPSSEG VCSDLDELFL FNPRAILPCF VVIYQVIAIR AT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.169870.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG057100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828324.10.0uncharacterized protein LOC112903299
TrEMBLA0A2T7CKL10.0A0A2T7CKL1_9POAL; Uncharacterized protein
STRINGPavir.Ha00821.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-80C2H2-like zinc finger protein