PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG059800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 247aa    MW: 25315.6 Da    PI: 4.7871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG059800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-172772352
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ 
  Pavir.8NG059800.1.p 27 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDTAALV 72
                         9****998.**********843...6*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-112571IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-212683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-312684IPR001471AP2/ERF domain
PROSITE profilePS5103223.1432683IPR001471AP2/ERF domain
SMARTSM003803.0E-352689IPR001471AP2/ERF domain
CDDcd000181.55E-272784No hitNo description
PRINTSPR003671.2E-102738IPR001471AP2/ERF domain
PRINTSPR003671.2E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPDSDGTSSP APPRRGGKGG GGRRPAYRGV RMRAWGKWVS EIREPRKKSR IWLGTFPTAE  60
MAARAHDTAA LVVKGPAAVL NFPEIAASLP RPASAAPRDV QAAAARAAAM DVPAAVVGAA  120
AAAVPPAAPQ EAPPSPHQLV PGPGQALAAA DPDEELEEIV ELPAIDEEAL AAADDLFWTT  180
AASFHHDSAA ADLWYEPAAA WMHAAGSAAH ADDMPLVVPG LAADQLWAPQ PDGIVSSGLG  240
ALLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191583372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11422RGGKGGGGR
21521GGKGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG059800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745751e-117EU974575.1 Zea mays clone 453357 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813011.11e-105ethylene-responsive transcription factor ERF038-like
SwissprotQ9M0802e-45ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A3L6PI471e-111A0A3L6PI47_PANMI; Ethylene-responsive transcription factor TINY isoform X3
STRINGPavir.Da00839.1.p1e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25820.15e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]