PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG062800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 397aa MW: 40654.7 Da PI: 9.5646

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG062800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	138.5	5.6e-43	103	245	2	122
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s as++ss+ Pavir.8NG062800.1.p 103 APAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGASHPSSAas 192 899******************************************************************999999999999999999876 PP TCP 89 kaaksaakskksqksaasalnlakesr...................akarara 122 +aa++ ++ +++++ a++l ++ ++ a + +r+ Pavir.8NG062800.1.p 193 RAAAAFHHLPPPHHEVAAMLGWNHGHHhqqqflpppqqqqapqdpgAGEFMRK 245 44444447777788888888888844434555555555444444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.2E-37	109	236	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.349	109	163	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MDAPSSSTST STSTNSSRSA SEHQQHQHRQ HHAAGQPHHP FYYAGAAGGG AAAAANAAGM 60 PQFMGSLAIV QQAPSAGAGA GEVQLAQASG SSGGAEKKAV VPAPAKRPTK DRHTKVEGRG 120 RRIRMPALCA ARVFQLTREL GHKTDGETIE WLLQQAEPAI VAATGTGTIP ANFSSLAVSL 180 RSGASHPSSA ASRAAAAFHH LPPPHHEVAA MLGWNHGHHH QQQFLPPPQQ QQAPQDPGAG 240 EFMRKRYREG ADDLFKDAAA RQNPDDGGSG EGEEHKARVA PPAGAMWAVA PPSSSAAGAF 300 WIQPAWAFGA GAGASTVQAP LQFMSTRSSS NNNFPGGATM DANIGMLAAL NASGGGAQHH 360 QQQEQQEGQP AEMAQRHRTG AGANGGGAGR GAASPQ*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MDAPSSSTST STSTNSSRSA SEHQQHQHRQ HHAAGQPHHP FYYAGAAGGG AAAAANAAGM  60
PQFMGSLAIV QQAPSAGAGA GEVQLAQASG SSGGAEKKAV VPAPAKRPTK DRHTKVEGRG  120
RRIRMPALCA ARVFQLTREL GHKTDGETIE WLLQQAEPAI VAATGTGTIP ANFSSLAVSL  180
RSGASHPSSA ASRAAAAFHH LPPPHHEVAA MLGWNHGHHH QQQFLPPPQQ QQAPQDPGAG  240
EFMRKRYREG ADDLFKDAAA RQNPDDGGSG EGEEHKARVA PPAGAMWAVA PPSSSAAGAF  300
WIQPAWAFGA GAGASTVQAP LQFMSTRSSS NNNFPGGATM DANIGMLAAL NASGGGAQHH  360
QQQEQQEGQP AEMAQRHRTG AGANGGGAGR GAASPQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20560	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG062800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827969.1	1e-170	transcription factor PCF3-like
Swissprot	Q53PH2	1e-96	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A3L6Q3C2	1e-171	A0A3L6Q3C2_PANMI; Uncharacterized protein
STRING	Pavir.Ha00851.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-43	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG062800.1.p