PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG096300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 571aa    MW: 61197.4 Da    PI: 7.9748
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG096300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-103433801954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Pavir.8NG096300.1.p 343 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 380
                          554458******************************88 PP
2BELL97.98.3e-32210279372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +e q +k++L+s++e V++rYkqy++qlq vissFe+vagl +a+p++s+Al+++S+hF+cLk +i +q+
  Pavir.8NG096300.1.p 210 AEQQWRKTRLISIMEDVCRRYKQYYQQLQSVISSFETVAGLSNAAPFASMALRTMSKHFKCLKGMILNQL 279
                          58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-39140277IPR006563POX domain
PfamPF075261.2E-37145275IPR006563POX domain
PROSITE profilePS5007112.487321384IPR001356Homeobox domain
CDDcd000863.78E-14324385No hitNo description
SMARTSM003892.9E-11324388IPR001356Homeobox domain
SuperFamilySSF466894.71E-17326391IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28327388IPR009057Homeodomain-like
PfamPF059205.0E-19341380IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSSAAGGGYG GGGGGDHHQH LLLGQAAGQL YHVPQHSRRE KLRFPPDPAD SPAPAAWPPA  60
PPPFYSYASS STSSYSPHSP ALPHAQMVAH VLPAAGAGAQ IPSQNFALSL SSASSNPPPH  120
APRRPHLAAG VATGPYGPFT GYAAVLGRSR FLGPAQKLLE EICDVGGRPA QLDRRSDDDG  180
SLDMDAAGDA DHDMDGGDRA AAEAVVVSGA EQQWRKTRLI SIMEDVCRRY KQYYQQLQSV  240
ISSFETVAGL SNAAPFASMA LRTMSKHFKC LKGMILNQLR NTSKVAAHDG IGKEDMANFA  300
LMGGGSGLLR GNSGNAFSQP HNIWRPQRGL PERAVSVLRS WLFEHFLHPY PTDSDKQMLA  360
KQTGLTRNQV SNWFINARVR LWKPMVEEIH NLEMRQQHKN PSHDKNQLGM QQTQHSSDSS  420
GKPSDPSSSQ RGQSSGMMAR NLSSPASRHI QDELSQMPHD MPAGQVSFAY NGLAAHPGLA  480
LSHPQQAEGV GTDVGGAAAN GGVSLTLGLH HQNNRTYIAE PLPAALPLNL AHRFGLEDVS  540
EAYVMGSFAG QDRHFTKEIG GHHLFHDFVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16330388563Homeobox protein Meis2
4xrm_B1e-16330388563Homeobox protein Meis2
4xrs_A9e-17330387158Homeobox protein Meis1
4xrs_B9e-17330387158Homeobox protein Meis1
5bng_A9e-17330388159Homeobox protein Meis2
5bng_B9e-17330388159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.199490.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG096300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810296.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2S3HBG80.0A0A2S3HBG8_9POAL; Uncharacterized protein
STRINGPavir.J02888.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-73TALE family protein