PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG107600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 841aa    MW: 94930.4 Da    PI: 8.3209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG107600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.11.3e-266597761128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lpp frFhPtdeel+ +yL++++         +i+evdiy++ePwdLp+++k ++ ewy  +  +k+ +   +++  ++sgyW atgk +
  Pavir.8NG107600.1.p 659 LPPAFRFHPTDEELILHYLCNRA---------TIPEVDIYNMEPWDLPARAKFGDCEWYLSCFPKKEWHIFCHRKYPISSGYWMATGKAR 739
                          79*****************9864.........4899************99999999***999988887765555556899********** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +   g+  g k+ Lvf+     +g+ t Wvmhey+l
  Pavir.8NG107600.1.p 740 RLTLSgaAGKMLGSKRRLVFH---LLSGKMTGWVMHEYHL 776
                          **998778889**********...677889********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078872.7E-17123275IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF078875.8E-37509656IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019411.44E-38656810IPR003441NAC domain
PROSITE profilePS5100531.011659810IPR003441NAC domain
PfamPF023659.3E-19660776IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MGSKRKPRRG HNSSSSPVSS SDEISTTEET TPRRRSSDAL AEAGRRRNTR KREDKVIWML  60
EWIKEGTKKL TEDTSKMQKQ LNKLTESHNE LRKQLELHIN GSSGDDSSAP RSETKHAQQP  120
PKYRLEFTCE VNDEIEKGQI IETKNNGKTI SVVLYDDHNQ IVATGPFASA SVMLVVVNGE  180
FNQHGNQYTW SRKDFERNIK RPRQGNSVME DEHHPVESIV SNCVFKLDGG VKGHSDATIL  240
YNSSNKKVRL GVMVLSPTDE RVLEGLSNLF FVRGHDRPAR QCNPHNSGLK RLKHKARVGY  300
SYQERNGSML IVQNPSVTNL VQPEESRCNP AAGTLLFPGN TFTETSASIP QHQFSHLGTT  360
NIGIAPATYN LPAGNEQLLL SGGNFAHPDL VSHDYSTGSE NFPNATKGTH FNMDQIALPV  420
QLRWDVPNVE STKRWSLLDQ LMPLYSCAQK YTNYDSPTMG IMPELYVSLA IIPKQVTQSR  480
RKRGVLIELH ELEDSDEKRP RKRQSHTKYR LRFVNKVNEA YYTMNPIKAD DGSHLKVALF  540
DENDMKVTFG PLSSASVEVV ALHGDFNVNG QDYWTSEEFS HCVVCPWHRK EASVLGGDRI  600
LVLAEGEACL GNAFFQVTSF LARTGKFKMG VMLASVQEER IQEGMSEPLL VQDRQLEGLP  660
PAFRFHPTDE ELILHYLCNR ATIPEVDIYN MEPWDLPARA KFGDCEWYLS CFPKKEWHIF  720
CHRKYPISSG YWMATGKARR LTLSGAAGKM LGSKRRLVFH LLSGKMTGWV MHEYHLPDNN  780
TLRSIISSTT ASSSTSSTRD EWVLCRIFKK TDLLQPSPFL DDDAPVSPLR DCRLQAFLSV  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-2865981017165NO APICAL MERISTEM PROTEIN
1ut4_B5e-2865981017165NO APICAL MERISTEM PROTEIN
1ut7_A5e-2865981017165NO APICAL MERISTEM PROTEIN
1ut7_B5e-2865981017165NO APICAL MERISTEM PROTEIN
3swm_A6e-2865981020168NAC domain-containing protein 19
3swm_B6e-2865981020168NAC domain-containing protein 19
3swm_C6e-2865981020168NAC domain-containing protein 19
3swm_D6e-2865981020168NAC domain-containing protein 19
3swp_A6e-2865981020168NAC domain-containing protein 19
3swp_B6e-2865981020168NAC domain-containing protein 19
3swp_C6e-2865981020168NAC domain-containing protein 19
3swp_D6e-2865981020168NAC domain-containing protein 19
4dul_A5e-2865981017165NAC domain-containing protein 19
4dul_B5e-2865981017165NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG107600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.10.0PREDICTED: uncharacterized protein LOC107304550
TrEMBLA0A368SCE21e-152A0A368SCE2_SETIT; Uncharacterized protein
STRINGPavir.Ha00781.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-31NAC domain containing protein 47