PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG113600.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 429aa    MW: 48906.3 Da    PI: 8.2546
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG113600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.21.5e-272473641128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lpp frFhPtdeel+ +yL++++         +i+evdiy+++PwdLp+++k ++ ewy  +  +k+ +   +++  ++sgyW atgk +
  Pavir.8NG113600.4.p 247 LPPAFRFHPTDEELILHYLCNRA---------TIPEVDIYNMQPWDLPARAKFGDCEWYLSCFPKKEWHIFCHRKYPISSGYWMATGKAR 327
                          79*****************9864.........4899************99999999***999988887765555556899********** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +   g+  g k+ Lvf+    p+g+ t Wvmhey+l
  Pavir.8NG113600.4.p 328 RLTLSgaAGKMLGSKRRLVFH---LPSGKMTGWVMHEYHL 364
                          **998778889*********9...89************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078878.6E-3897244IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019415.1E-39244398IPR003441NAC domain
PROSITE profilePS5100530.831247398IPR003441NAC domain
PfamPF023653.3E-19248364IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDQIALPVQL LWDVPNVEST KRWSLLDQLM PLYSCAQKYT NYDSPTMGIM PKLYVSLAII  60
PKQVTQSRRK RGVLIELLEL EDSDEKRPRK RKSHTKYRLR FVNKVNEAYY TMNPIKADDG  120
SHLKVALFDE NDMKITFGPL SSASVEVVAL HGDFNVNGQD YWTSEEFSHC VVCPWHRKEA  180
SVLGGDRILV LAEGEACLGN AFFQVTSFLA RTGKFKMGVM LASVQEERIQ EGISEPLLVK  240
DRQLEGLPPA FRFHPTDEEL ILHYLCNRAT IPEVDIYNMQ PWDLPARAKF GDCEWYLSCF  300
PKKEWHIFCH RKYPISSGYW MATGKARRLT LSGAAGKMLG SKRRLVFHLP SGKMTGWVMH  360
EYHLPDNTTL RSIISSTTAS SSTSSTRDEW VLCRIFKKTD LLQPSPFLDD DAPVSPLRDC  420
RLQAFLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-2924740320173NAC domain-containing protein 19
3swm_B2e-2924740320173NAC domain-containing protein 19
3swm_C2e-2924740320173NAC domain-containing protein 19
3swm_D2e-2924740320173NAC domain-containing protein 19
3swp_A2e-2924740320173NAC domain-containing protein 19
3swp_B2e-2924740320173NAC domain-containing protein 19
3swp_C2e-2924740320173NAC domain-containing protein 19
3swp_D2e-2924740320173NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18591KRPRKRK
28993KRKSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG113600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.11e-115PREDICTED: uncharacterized protein LOC107304550
TrEMBLJ3ML406e-99J3ML40_ORYBR; Uncharacterized protein
STRINGPavir.Ha00781.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-33NAC domain containing protein 47