PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG132300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 650aa MW: 76519.9 Da PI: 7.7732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG132300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.5	7.6e-12	100	171	11	90
FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 G+ +rk +++ + +++++ C+++gk++ ++ ++ rr++ +t+Ck k+ vk+ +g+w+ tk+++ HnH+++ Pavir.8NG132300.1.p 100 GYAIRKGTNYLK------KTYHLECNRSGKARVMESP-QRIRRRNYIVKTNCKMKVIVKLI-NGQWVFTKVDTMHNHNVV 171 555666655555......56889*******99998.99*****************.*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-9	98	171	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-34	294	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.939	579	615	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MQASSVKETI VLEECNQDAA SHDLEMDINV EEEDRSKSIE EVEIEDDVGS DDEATISKNQ 60 DYIFPTPEEV EKCVEPCVGM RFQSLTEAQR YLSVHGLLNG YAIRKGTNYL KKTYHLECNR 120 SGKARVMESP QRIRRRNYIV KTNCKMKVIV KLINGQWVFT KVDTMHNHNV VSSPSLTNFF 180 LNHKRMTDDE KAFSKILQDA RIKPMKIMAI FRELKGSFKN VFFKARNLDN LKQKEMIKTR 240 NSDIEATVNY LKKVQIESPG FYYTMRVDEE NRVKSIFWTD ARGKMDYELY GDFISFDTTF 300 STNKYNMPFA LIVGINGHAK NVIFGCALLE DQTAETFEWV FKTFVETMNG KKPKIIMTDQ 360 DAAMKKAIAD FMPDVIHRLC IWHIMKNILE KCGSFMSQKH REGMEKKLNE LVYDSLSVLE 420 FESGWQQMLN DYDAEKNEHL QTMNMLRKMW IPVYFKEVLC PFIHSTSRSE STNSYFKDYV 480 IPKDTIENFM RQFQIIQEAS MNKEDENRFT SLVKEPIYCT HQRIERQAAK LYNRDIFVKF 540 QTELFNATAF SVMELIKDRQ YAVIKNSYYH NPEFWKDKFI IEVDKAKQEF NCECNKLKRD 600 GMVCCHILRL FTQLGIHKLP DQCINRRWTK KYREEELEKQ KKECTKEIG*

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MQASSVKETI VLEECNQDAA SHDLEMDINV EEEDRSKSIE EVEIEDDVGS DDEATISKNQ  60
DYIFPTPEEV EKCVEPCVGM RFQSLTEAQR YLSVHGLLNG YAIRKGTNYL KKTYHLECNR  120
SGKARVMESP QRIRRRNYIV KTNCKMKVIV KLINGQWVFT KVDTMHNHNV VSSPSLTNFF  180
LNHKRMTDDE KAFSKILQDA RIKPMKIMAI FRELKGSFKN VFFKARNLDN LKQKEMIKTR  240
NSDIEATVNY LKKVQIESPG FYYTMRVDEE NRVKSIFWTD ARGKMDYELY GDFISFDTTF  300
STNKYNMPFA LIVGINGHAK NVIFGCALLE DQTAETFEWV FKTFVETMNG KKPKIIMTDQ  360
DAAMKKAIAD FMPDVIHRLC IWHIMKNILE KCGSFMSQKH REGMEKKLNE LVYDSLSVLE  420
FESGWQQMLN DYDAEKNEHL QTMNMLRKMW IPVYFKEVLC PFIHSTSRSE STNSYFKDYV  480
IPKDTIENFM RQFQIIQEAS MNKEDENRFT SLVKEPIYCT HQRIERQAAK LYNRDIFVKF  540
QTELFNATAF SVMELIKDRQ YAVIKNSYYH NPEFWKDKFI IEVDKAKQEF NCECNKLKRD  600
GMVCCHILRL FTQLGIHKLP DQCINRRWTK KYREEELEKQ KKECTKEIG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG132300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0A9T3X6	0.0	A0A0A9T3X6_ARUDO; Uncharacterized protein
STRING	Pavir.Ha01487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-86	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8NG132300.1.p