PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG136500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 345aa    MW: 37110.3 Da    PI: 8.1654
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG136500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.52e-22130174145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          daepgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+
  Pavir.8NG136500.1.p 130 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRNCHRSRKHVES 174
                          79****************************************996 PP
2QLQ57.34.7e-2070106137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++
  Pavir.8NG136500.1.p  70 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIRR 106
                          59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-1270106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.4E-1471105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.46471106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.468130174IPR014977WRC domain
PfamPF088792.0E-17131173IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
METGRDGFFG AAERASPPPP PPSCSFLGSA AATTGSGGAQ MLSFSSSGAA GLGLSSGASK  60
MQGVLSRVRG PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIRRSVNP WSGLGSSSLG  120
WTPFRPGSGD AEPGRCRRTD GKKWRCSRDA VGDQKYCERH IKRNCHRSRK HVESRKVTPT  180
IAEPSLAVSG GPSLHSYAVP WQQQVKSSAA NVTDPFPRVS NRKLLEKQNV HSQLSVSTPM  240
DSSDFSTSGS SQNRDIVALS PVEFQHDHDQ AYLVHGVGSS AENDNELQES LLLVSRETLD  300
DGPLGEVFKS KSCQSAYADI LTDQWTATHD LHSPTGILQL SNSNT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79300.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG136500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827128.10.0growth-regulating factor 8-like isoform X1
SwissprotQ6AWY11e-138GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A2S3IEP90.0A0A2S3IEP9_9POAL; Uncharacterized protein
STRINGPavir.Hb00712.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-41growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]