PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG143400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 200aa    MW: 21555.3 Da    PI: 8.5005
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.59e-22111421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                          +pp frF+Pt+ el+ +yL ++++g++     +i++    ++ PwdL  ++  ++e+e yf +++ ++ + g r+ r  +   g Wk + 
  Pavir.8NG143400.1.p  11 VPPTFRFRPTQRELIEFYLLPRARGQDPFPGVIIEDDAAGSSLPWDLFeRHGLGSEDEAYFLARTGEARKPGARQDRGCDggVGAWKMQS 100
                          5999*********************99444255888888999*****723333466799******************65523677**998 PP

                  NAM  88 kdkevlskkgelvgl.kktLvfykgrapkgektdWvmheyrl 128
                          + ++ l+ +ge + + +  L ++ g+ ++g +  Wvmhey++
  Pavir.8NG143400.1.p 101 SAEKGLRVGGERILCrRSNLSLHMGKGKSGGSVGWVMHEYTI 142
                          8777766666665551678*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-279158IPR003441NAC domain
PROSITE profilePS5100530.03911159IPR003441NAC domain
PfamPF023655.5E-1512142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAAAAEIPDE VPPTFRFRPT QRELIEFYLL PRARGQDPFP GVIIEDDAAG SSLPWDLFER  60
HGLGSEDEAY FLARTGEARK PGARQDRGCD GGVGAWKMQS SAEKGLRVGG ERILCRRSNL  120
SLHMGKGKSG GSVGWVMHEY TIAAPPCPSP VKICHITFTG HGRKRKRVPD GQEDCAGEHA  180
SRRARVEAAA AGGRSSGEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-1351429140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952258.11e-111uncharacterized protein LOC101779761
TrEMBLA0A3L6RRN51e-121A0A3L6RRN5_PANMI; Uncharacterized protein
STRINGPavir.J05743.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-10NAC domain containing protein 38