PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG165000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 277aa    MW: 28723.9 Da    PI: 5.3968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG165000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.9e-131051461255
                  AP2  12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +g+++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Pavir.8NG165000.1.p 105 WGKFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 146
                          9*********43343..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.79583154IPR001471AP2/ERF domain
SMARTSM003801.1E-21104160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-23104155IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-17104155IPR016177DNA-binding domain
PfamPF008478.9E-9105146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEEGNHTSSA SGIYDSAAAP AAAPLPFDAA DGADDMLLLL DAFLLGTDAA GDSSDWLSAS  60
PSSSSDAAVV PLSPSTPEQR RRQDAGVSPP GEKRPATPAF IGAPWGKFAA EIRDSTRRGA  120
RVWLGTFDTP EAAALAYDQA AFSARGAAAV LNFPVEGVRE SLAALALAGT GAGGGGCGSP  180
VLALKRRHSK RTRRRKQQLS PATDSGGRNH VNPRRQPESH CADAPAVPVP EPEQRVAARC  240
QCHCRGGGVV ELEDLGTDYL DELLRVSSES ECSLIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-211041562274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196TRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG165000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276832e-68KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828259.14e-97ethylene-responsive transcription factor ERF091-like
TrEMBLA0A3L6Q2G41e-104A0A3L6Q2G4_PANMI; Uncharacterized protein
STRINGPavir.J02104.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-26ethylene-responsive element binding factor 15