PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG165100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 112aa    MW: 12548.4 Da    PI: 10.0675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG165100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.1e-197583485
                         SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                         + l ++d +g++W++++ y+++s+ y+ltkGW++Fv+++gL++gD+v F+++
  Pavir.8NG165100.1.p  7 VLLDVQDGEGKTWRFRYLYCRSSRIYILTKGWRRFVREKGLQAGDTVAFSRS 58
                         568899*******************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.844174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-18464IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-16664IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-16758IPR003340B3 DNA binding domain
CDDcd100174.12E-15958No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MAAGMGVLLD VQDGEGKTWR FRYLYCRSSR IYILTKGWRR FVREKGLQAG DTVAFSRSAI  60
GPFKQMHIDY WKKKQEDVTA DDAIAAVDSP VVMLFGLDIA RRGSPELRSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2068051124DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG165100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828655.11e-59B3 domain-containing protein Os02g0764100-like
SwissprotQ9AWS71e-27Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A1E5V5308e-31A0A1E5V530_9POAL; Putative AP2/ERF and B3 domain-containing protein
STRINGPavir.J36323.1.p2e-76(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.18e-22RAV family protein