PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG170300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 258aa    MW: 27908.4 Da    PI: 5.4441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG170300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.22.3e-25103162157
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 
                          +dDgy+WrKYG K++++ ++pr Y+rCt++   gC ++k+v+r ++dp++++itY geH+
  Pavir.8NG170300.1.p 103 MDDGYAWRKYGEKSIQDHKNPRFYFRCTYRdelGCGARKQVDRIEDDPSLFHITYFGEHT 162
                          59***************************99999*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-2497163IPR003657WRKY domain
PROSITE profilePS5081123.00998166IPR003657WRKY domain
SuperFamilySSF1182906.15E-2499165IPR003657WRKY domain
SMARTSM007743.1E-32103167IPR003657WRKY domain
PfamPF031061.6E-23104162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MATADRASAA CGVMAEAREA TARLLALLQA TGADPGKREL AEQIICCIDR ARAAVRGAGD  60
GTGKTTGHGF GLGARPPAGS KRRRARRGCG EEARARVVAS SAMDDGYAWR KYGEKSIQDH  120
KNPRFYFRCT YRDELGCGAR KQVDRIEDDP SLFHITYFGE HTPACPRDDA ATAELDGDGR  180
RLVVQACLDS FRPCLPPEGQ DPKQMPASMV EFTAGYCWPP TDQMANLVSS DVCFGTPGEL  240
ESLDAISMEE LMDLLWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1998162367OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG170300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810145.11e-133probable WRKY transcription factor 38
TrEMBLA0A2T7ECH41e-141A0A2T7ECH4_9POAL; Uncharacterized protein
STRINGPavir.J05250.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1869769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-19WRKY DNA-binding protein 70