PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG175600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 133aa MW: 14391.9 Da PI: 4.334

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG175600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	31.2	4.6e-10	2	58	40	96
NF-YC 40 saeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 s+e+P +++k e+fi elt+r+ + a++ r+++ sdi +a+++ + + l ++ Pavir.8NG175600.1.p 2 SSETPPVVTKVLEIFIQELTVRALMCAKSHGRSSILESDIYEAINSGESYVCLNNVL 58 89*********************************************9999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-9	1	45	IPR009072	Histone-fold
SuperFamily	SSF47113	8.38E-9	1	59	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MSSETPPVVT KVLEIFIQEL TVRALMCAKS HGRSSILESD IYEAINSGES YVCLNNVLRR 60 AVTNHDQASM SSNAPQLQQE PHFVAATSRL IENGATDHPY KSGEEATQIS IEEPDEDLNL 120 PTTSSGGTEE TK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG175600.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450581.1	3e-29	uncharacterized protein LOC8071541
TrEMBL	A0A2S3IDE3	2e-71	A0A2S3IDE3_9POAL; Uncharacterized protein
STRING	Pavir.Ha01152.1.p	1e-90	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17894	5	10

Link Out ? help Back to Top
Phytozome	Pavir.8NG175600.1.p