PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG183100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 711aa    MW: 72144 Da    PI: 8.0955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG183100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055104127123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          +kC+ C+  F r  +L+ H+r+ H
  Pavir.8NG183100.1.p 104 FKCSACPLKFGREKTLRGHMRSvH 127
                          89*******************999 PP
2zf-C2H217.41.3e-05422444123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C dCg++F+++  L+ H   H
  Pavir.8NG183100.1.p 422 YSCDDCGETFPTPQGLEGHVAGH 444
                          99*****************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-6103127No hitNo description
SMARTSM003550.0046104127IPR015880Zinc finger, C2H2-like
PfamPF139120.0015104129IPR007087Zinc finger, C2H2
PROSITE profilePS501579.972104127IPR007087Zinc finger, C2H2
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
SuperFamilySSF576672.94E-6417444No hitNo description
PROSITE profilePS5015710.803422449IPR007087Zinc finger, C2H2
SMARTSM003550.029422444IPR015880Zinc finger, C2H2-like
PfamPF139120.011422442IPR007087Zinc finger, C2H2
PROSITE patternPS000280424446IPR007087Zinc finger, C2H2
PfamPF139127.8E-8465490IPR007087Zinc finger, C2H2
SMARTSM003550.68466488IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280468488IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MKLRSQGESA AVGGCEKAAA VWSHRSKSPR PLHQRLPQYG RRHEGGASGS REIELPSGSL  60
ASGAGKEAAT IPQRGSPPLL SREAYGLLRD AEKIGLGVVA AEPFKCSACP LKFGREKTLR  120
GHMRSVHRQG CSSPSPSSSS SSEAPTPKKS RKKPKPKQAT VKTEPHHDDP PLPFPLARAA  180
TSRSHQVGDV LGEKPKVTVS QSPAAACNDV IVIEDDTSDD GNANPVAAVT GFGAVAIASS  240
APDPAAVLPV ARAPAAAIEV IVLDADSSND DKPNPTIAVT GIGAVASTGS DAEAVQPMAA  300
TPPPAAAAVA TAPGLDATAS VMTMEPPGPA GAATTSVTIA TAPPAAAAGV VAPIAADTVK  360
GNDLQEAGAR YSSNGGDGKA VAGYRSVSHG KAAAGYSSGG YGHGKAITIG GQSKRGLGNT  420
GYSCDDCGET FPTPQGLEGH VAGHKHKKSK ATPDLQSNLA CQSSRHVCMA CNKVLPTGQA  480
LGWHMKLHYA GLMIGVASDA GSSSARRPAA AAADEEPSEA IAMNINPEAV HGSAGAMRGW  540
SFPASARSAI LALPALMSPV HDPPQGMAMA GNPVVGPVSA PTPATGSSSL PAITSSVLPA  600
QISGAPGNRG GCTFRIFGVH TFPAFPSQNQ EENPPEEVAV VPGNGEHLYS FNISPPFPSQ  660
NPPETVPVNR GPEGNQEENP PQEMVPSNRG SRTIRLFGVN MAEGPKEMKK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153PKKSRKKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.277100.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG183100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T8I8P00.0A0A2T8I8P0_9POAL; Uncharacterized protein
STRINGPavir.Ha01132.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.12e-12C2H2-like zinc finger protein