PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG190200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 127aa    MW: 13409.1 Da    PI: 6.5095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG190200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-063961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k Fs++  L  H++ H
  Pavir.8NG190200.1.p 39 FSCSYCSKKFSTSQALGGHQNAH 61
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-63862IPR007087Zinc finger, C2H2
SuperFamilySSF576671.48E-63866No hitNo description
PROSITE profilePS5015711.8843966IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-43964IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDPTGGEGCG GGGGGDRHLD LNLSLRSSLE LELEPLGYFS CSYCSKKFST SQALGGHQNA  60
HRLERSIAKR SRELAAARGV EEDARRGKEP RISAPPIMAP SSSHMIMASP EAGEDLADKI  120
DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG190200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828607.11e-49zinc finger protein GIS3-like
TrEMBLA0A2T8I8202e-48A0A2T8I820_9POAL; Uncharacterized protein
STRINGPavir.Ha01090.1.p1e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-15zinc finger protein 2