PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG203900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 152aa MW: 16763.4 Da PI: 11.6885

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG203900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.6	2.4e-10	43	137	8	85
NAM 8 hPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk...........kvkaeek.ewyfFskrdkkyatgk...rknratks 80 +Pt el++ +L +k++g++ ++++ i+++d+y + P++L + + +a+ + wyfFs+ + +++ + +r+ +s Pavir.8NG203900.1.p 43 RPTPRELISSFLLPKIAGQQplPRAARYIHDADVYAAAPHHLAAthepappaalgSSRAGARpVWYFFSPLHYQQTDRRmplPCRRVGSS 132 7***************9986556667**********8457888988776333344459****99887654423234568889 PP NAM 81 gyWka 85 g+W Pavir.8NG203900.1.p 133 GTWMV 137 99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	11.872	36	151	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-11	43	141	IPR003441	NAC domain
Pfam	PF02365	6.4E-6	43	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MATKLDSLRR RRLLLQRRRP ASVVSITRGL QSLAVGAAPA AVRPTPRELI SSFLLPKIAG 60 QQPLPRAARY IHDADVYAAA PHHLAATHEP APPAALGSSR AGARPVWYFF SPLHYQQTDR 120 RMPLPCRRVG SSGTWMVYGG CWAQGFLYQY F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG203900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58

Link Out ? help Back to Top
Phytozome	Pavir.8NG203900.1.p