PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG212600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 143aa MW: 15913.5 Da PI: 10.5776

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG212600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.7	1.5e-16	44	125	16	99
EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l +p ae+ + k+++++ +g ++W vk+++ +k+gr++lt+GW +v+an+L + Df+vF++ + + l vkvf+ Pavir.8NG212600.1.p 44 LAVPSAVAERTRSR----KEVKVRINWGktmKTWPVKVSVAGKKGRMYLTSGWAAYVEANKLLAPDFIVFSYYV-DHGDLAVKVFDP 125 66777777666543....4566666666667**************************************865.5666799986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.8E-16	31	128	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.6E-4	31	126	IPR003340	B3 DNA binding domain
CDD	cd10017	1.09E-14	32	124	No hit	No description
SuperFamily	SSF101936	9.42E-15	43	132	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.152	44	126	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-13	44	124	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MARRRAHITF TADQTQRMKE RAHRPAGEAP VCQVLIEGHF EKALAVPSAV AERTRSRKEV 60 KVRINWGKTM KTWPVKVSVA GKKGRMYLTS GWAAYVEANK LLAPDFIVFS YYVDHGDLAV 120 KVFDPSGCRR IYPEGGPVVA NL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG212600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J38265.1.p	1e-66	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.8NG212600.1.p