PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG213700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 457aa MW: 53213.7 Da PI: 8.8682

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG213700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.2	5.2e-08	67	112	46	90
FAR1 46 kktekerrtraetrtgCkak.lkvkkekdgkwevtkleleHnHela 90 k+++++ rt +trtgC+a+ ++ + +++g+w v+k++l+HnH la Pavir.8NG213700.1.p 67 KSSKSTTRTGCTTRTGCNAHdVQFSVSREGVWTVQKVVLDHNHYLA 112 33467889999******768999999*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-5	64	112	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.26	371	409	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	383	406	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-7	384	411	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MTMGTELITT EAIPNETPDE VADKVTKTLI VPEVGMSFES KKAAYFMYNT YAGKIGFSIR 60 KSYRKTKSSK STTRTGCTTR TGCNAHDVQF SVSREGVWTV QKVVLDHNHY LANPNTRQKM 120 RSQRSVEEAN RKLIGQMREG GMKPAQVFEF MIDRQRKKYL GSNDAETLLE YLKNKQIEDP 180 AFFYAIQINQ EDGRMANFFW TDGQSIMDYA CFDKSEFYFN KKWDELLREY NLEDNEWMLN 240 LYYLKTKWAA VYRDSFTADM NSTQRSEGMN NVLKKRFCRK LGLSELLVEC EKITNSLRKN 300 ELDKDFESRR KSPVIYITSC PPLMTAAESY TGRMYKEFEE EFKEQFLFSC KLLHTNGSIL 360 TYMVTHMHSN YGATDVFNKE DITITCACRK YESIGILCKH ALKVFNVNDV FILPSQYILN 420 RWTKYAKRGF CIEKQESKES LNTRTASISQ RQHLLH*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MTMGTELITT EAIPNETPDE VADKVTKTLI VPEVGMSFES KKAAYFMYNT YAGKIGFSIR  60
KSYRKTKSSK STTRTGCTTR TGCNAHDVQF SVSREGVWTV QKVVLDHNHY LANPNTRQKM  120
RSQRSVEEAN RKLIGQMREG GMKPAQVFEF MIDRQRKKYL GSNDAETLLE YLKNKQIEDP  180
AFFYAIQINQ EDGRMANFFW TDGQSIMDYA CFDKSEFYFN KKWDELLREY NLEDNEWMLN  240
LYYLKTKWAA VYRDSFTADM NSTQRSEGMN NVLKKRFCRK LGLSELLVEC EKITNSLRKN  300
ELDKDFESRR KSPVIYITSC PPLMTAAESY TGRMYKEFEE EFKEQFLFSC KLLHTNGSIL  360
TYMVTHMHSN YGATDVFNKE DITITCACRK YESIGILCKH ALKVFNVNDV FILPSQYILN  420
RWTKYAKRGF CIEKQESKES LNTRTASISQ RQHLLH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG213700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319262.1	1e-117	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A452XFT7	1e-107	A0A452XFT7_AEGTS; Uncharacterized protein
STRING	Sb04g005390.1	1e-138	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15086	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-29	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8NG213700.1.p