PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG218900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 89aa MW: 10165.7 Da PI: 10.3406

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG218900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.4	3.5e-11	29	79	2	52
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteker 52 f+ +Y+ + GF+vrk++++k+k +g+i + +fvC +eg+r ++k++++++ Pavir.8NG218900.1.p 29 FWIRYGGQKGFEVRKRYTNKRKSDGKISSCRFVCANEGYRLPDKREEQETV 79 999***************************************999944433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-7	29	79	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MQGQFEGLLP SLLPQVGMEF GTVDEAWMFW IRYGGQKGFE VRKRYTNKRK SDGKISSCRF 60 VCANEGYRLP DKREEQETVA KKGGKKKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG218900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302768.1	1e-35	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_021302769.1	6e-36	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A2T7D7F0	9e-34	A0A2T7D7F0_9POAL; Uncharacterized protein
STRING	OS10T0571900-00	1e-33	(Oryza sativa)
STRING	Sb03g042985.1	6e-34	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-11	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Pavir.8NG218900.1.p