PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG230900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 245aa    MW: 27198.8 Da    PI: 8.9012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG230900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.31.3e-35171442128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          ppGf+F+Ptdee++ +yL +++ + +l+  ++i +vd+++++Pw+L     +++ e yfFs+r  k + g++ nra+ +g Wk++gkd +
  Pavir.8NG230900.1.p  17 PPGFKFRPTDEEIILHYLLPRTVNAPLPS-SFIVDVDVLSHNPWELL---PEGSMEKYFFSQRVLKWPLGNHWNRAAGDGHWKTSGKDVP 102
                          9*************************999.89**************4...3567899********************************* PP

                  NAM  92 vlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                          +++   +        +g kktLvfy+g++  ge+t+Wvm+ey+l
  Pavir.8NG230900.1.p 103 IFCGrvN--GgeplmIGSKKTLVFYHGKSDFGENTEWVMQEYSL 144
                          **96551..145677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3913149IPR003441NAC domain
PROSITE profilePS5100538.46516208IPR003441NAC domain
PfamPF023654.1E-2117144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MALPQPAVSA ASIAHAPPGF KFRPTDEEII LHYLLPRTVN APLPSSFIVD VDVLSHNPWE  60
LLPEGSMEKY FFSQRVLKWP LGNHWNRAAG DGHWKTSGKD VPIFCGRVNG GEPLMIGSKK  120
TLVFYHGKSD FGENTEWVMQ EYSLVGAGLT PYRVMRPSGS NHFGESSSAA VAITEKNDNT  180
SEALNNNAKF PILLNPDKSW IVSHIYKKRN HMPQVIAQFY NSAEGGQVPF YNFLEQGNSR  240
GVRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2991448140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG230900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828726.11e-112uncharacterized protein LOC112903717
TrEMBLA0A2T7CND41e-157A0A2T7CND4_9POAL; Uncharacterized protein
STRINGPavir.Ha00593.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-36NAC domain containing protein 41