PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG233400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 334aa    MW: 38193.4 Da    PI: 8.4863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG233400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.4e-16831561686
                          EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  16 lvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           ++  +f++++g+  ++++tl+ +  +    rsW+v + +  ++++  lt+GW++F+ +n++kegD+++F +++
  Pavir.8NG233400.1.p  83 KTIAGTFCKAIGLWRASEVTLRTMADKDhghRSWQVGFLFYENRNSGELTRGWRRFCTDNRIKEGDICTFNVIE 156
                          478999**99977766655554443333567*******9955555555**********************9765 PP
2B341.32.8e-13242321786
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +++ l++ +l++p++f++++g+  +  +++tl++  +     rsW+v++    +++r ++t+G + F  +n++kegD+ +F  ++
  Pavir.8NG233400.1.p 242 SAYILST-LLYVPRNFCKAIGLCRT--TEITLRTAVNedhglRSWQVRF--LVSGKRGMITRGCRTFWADNRIKEGDIYTFNIIN 321
                          4455544.69**********88844..456666644445779*******..67777778**********************9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.01160168IPR003340B3 DNA binding domain
PfamPF023621.2E-1284156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-1684166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-1488166IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-1289152No hitNo description
PROSITE profilePS5086310.969100168IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-15234332IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-9235317No hitNo description
PROSITE profilePS508639.432235333IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-16236332IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.002237333IPR003340B3 DNA binding domain
PfamPF023622.6E-11243321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGSVCVVLAP DLSSPSLCFL HDCIEHYLCR LIDFERNFDR LSFTPPSGRQ FRSLSGEENF  60
KKPTSPITSS NKAPLSMNRI VYKTIAGTFC KAIGLWRASE VTLRTMADKD HGHRSWQVGF  120
LFYENRNSGE LTRGWRRFCT DNRIKEGDIC TFNVIETTLW HVDITRHCED QGTISNELEQ  180
TLSDTEKEDV PSSSRKRKCE DKKPDSEENS KRTKSPTTSL NKAPSSIVYE IGTPFSFKRE  240
ISAYILSTLL YVPRNFCKAI GLCRTTEITL RTAVNEDHGL RSWQVRFLVS GKRGMITRGC  300
RTFWADNRIK EGDIYTFNII NTTLWHVDIM CHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG233400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.11e-142putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2T7CTG11e-144A0A2T7CTG1_9POAL; Uncharacterized protein
STRINGPavir.Ga02445.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.15e-11B3 family protein