PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG243700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 218aa    MW: 23505.2 Da    PI: 8.7421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG243700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-1077110339
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgta 39 
                          + GVr ++ +g+++AeIrd +++g  +r++lg+f+t+
  Pavir.8NG243700.1.p  77 FIGVRKRP-WGKFAAEIRDSTWRG--ARVWLGTFDTP 110
                          57******.**********88887..*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.69476109IPR001471AP2/ERF domain
SMARTSM003802.2E-576126IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1077110IPR016177DNA-binding domain
PfamPF008473.9E-577109IPR001471AP2/ERF domain
PRINTSPR003674.1E-57788IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1477110IPR001471AP2/ERF domain
PRINTSPR003674.1E-5100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEHVQVQCTS YSYSSNCYPA EAPAGSSAAL PLDTADGDDM YMQLKALLHQ MEVDDETTTG  60
DEQSWRESSS RRRPEAFIGV RKRPWGKFAA EIRDSTWRGA RVWLGTFDTP RPPRSPTTTP  120
PTPHAAPPPC STSPSSASGS RSARLRSPSG NSPVLALKRR HSKRTRRSKL AAAGSSLKTQ  180
LHPTTTLHFS GVSAMDVVAS PCSCGTVELE DLGADYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG243700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828658.11e-74ethylene-responsive transcription factor ERF094-like
TrEMBLA0A2T7CMG41e-78A0A2T7CMG4_9POAL; Uncharacterized protein
STRINGPavir.J01079.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-14ethylene-responsive element binding factor 15