PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG243900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 326aa    MW: 33972.9 Da    PI: 4.7691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG243900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-13149198355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + GVr ++ +g+++AeIrd      +r +r+ +g f+t+e Aa a+++a+ + +g
  Pavir.8NG243900.1.p 149 FIGVRKRP-WGKFAAEIRD----SmRRgARVGIGMFDTPEAAALAYDQAAFSARG 198
                          68******.**********....33235***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-18148208IPR016177DNA-binding domain
PROSITE profilePS5103219.137148206IPR001471AP2/ERF domain
SMARTSM003802.7E-23148212IPR001471AP2/ERF domain
CDDcd000181.18E-11149207No hitNo description
PfamPF008479.6E-10149198IPR001471AP2/ERF domain
PRINTSPR003677.8E-10149160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-23149207IPR001471AP2/ERF domain
PRINTSPR003677.8E-10188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEHELYTSYC YPAAEPAASP TFHLGATDGD ILLQLEAFLL DGIDAEVCSD WSSPLSSFSP  60
EMGAATGSAT IGNSQHWMPG TDDTDDILLK IDAFLLGTEC SADWLSPSSP SSSEAAAAVS  120
PSRSSQHRLP VADADADVSP GEKRKRPAFI GVRKRPWGKF AAEIRDSMRR GARVGIGMFD  180
TPEAAALAYD QAAFSARGAG AVLNFPVERV RESLGALALA GADAGGAGGG SPVVALKWRH  240
SKRTRRRKVS PATESSRNPK PQGSPASQSY DVSGGMAAAV PLQATTTAPV TSAGRGQCGI  300
AELDVLGEDY LEELLRVVSS EMGEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-201492081574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG243900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828657.11e-117ethylene-responsive transcription factor 15-like
TrEMBLA0A3L6Q3131e-120A0A3L6Q313_PANMI; Uncharacterized protein
STRINGPavir.J01078.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2764845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-29ethylene response factor 1