PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG244700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 276aa    MW: 29384.9 Da    PI: 6.5224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG244700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-1699148355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + GVr ++ +g+++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Pavir.8NG244700.1.p  99 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSTRG 148
                          67******.**********43343..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.2E-3098162IPR001471AP2/ERF domain
PROSITE profilePS5103221.7298156IPR001471AP2/ERF domain
PfamPF008474.3E-1299148IPR001471AP2/ERF domain
PRINTSPR003672.0E-899110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-2899157IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2099158IPR016177DNA-binding domain
CDDcd000182.61E-1599157No hitNo description
PRINTSPR003672.0E-8122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNHTSSASGI YDSAGAPTAP PLLFGAADDT EDMLRQLDAF LFATDAAEDS SDWLSASPSS  60
SSEPSEAGMV PLSPSTPEQQ RRPDAGASPP GEKRPATAFI GVRKRPWGKF AAEIRDSTRR  120
GARVWLGTFD TPEAAALAYD QAAFSTRGAA AVLNFPVERV RESLAALALA GAGGGGSPVL  180
ALKRRHSKRT RRRKEQLSPA TDTGRNHLKP RRQPERQCAD ASPVPLPVPE PEQRVAALCQ  240
CHCGRGGVVE LEDLGTDYLD ELLRVSSELE CSLIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-24991581574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG244700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276833e-83KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828259.11e-100ethylene-responsive transcription factor ERF091-like
SwissprotQ8VYM03e-40ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A3L6Q2G41e-103A0A3L6Q2G4_PANMI; Uncharacterized protein
STRINGPavir.Ha01200.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-34ethylene response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]