PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG247200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 131aa MW: 15070 Da PI: 9.6838

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG247200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	1e-19	1	80	10	89
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +GF+vrk++++ s+ +ge+t+ ++vCs+eg+r++ +++ + + raetrt+Cka + + +++ +++evt+++leHnH l Pavir.8NG247200.1.p 1 MGFDVRKRYKNVSRYDGEVTSCRYVCSNEGHRRKGQSD-NAPKLFRAETRTDCKAWMSLILDReAKNYEVTDVVLEHNHLL 80 7*******************************9999.99999**********99998899***********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-15	1	80	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MGFDVRKRYK NVSRYDGEVT SCRYVCSNEG HRRKGQSDNA PKLFRAETRT DCKAWMSLIL 60 DREAKNYEVT DVVLEHNHLL HLPETRHLMT ADDSGIRPKA AHELASRQVG GSLNLSYTCR 120 DRKNYLQSKR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG247200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462668.1	4e-73	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021310602.1	3e-73	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A287W7A6	8e-63	A0A287W7A6_HORVV; Uncharacterized protein
TrEMBL	A0A287W7H4	1e-62	A0A287W7H4_HORVV; Uncharacterized protein
TrEMBL	A0A453IBS9	4e-62	A0A453IBS9_AEGTS; Uncharacterized protein
TrEMBL	A0A453IBT4	6e-62	A0A453IBT4_AEGTS; Uncharacterized protein
TrEMBL	A0A453IBT6	8e-64	A0A453IBT6_AEGTS; Uncharacterized protein
STRING	Sb02g029930.1	1e-72	(Sorghum bicolor)
STRING	Sb02g042670.1	5e-74	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-08	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG247200.1.p