PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG247600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 283aa MW: 32261.4 Da PI: 5.1299

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG247600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.6e-16	116	234	1	86
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................................tekerrtraet 58 kfYn+YA ++GFs+r+s+++ s+ ++e k +fvC+keg+ +++k++ ++r++++ + Pavir.8NG247600.1.p 116 KFYNSYACRIGFSIRTSTTRLSSLTREQNKVQFVCNKEGRGRKQKEEqgaasfeesnydeedsepdddndgsvkkkkldGGRKRKREKMQ 205 6*************************************99999999***********************9998889999999 PP FAR1 59 rtgCkaklkvkkekdgkwe..vtkleleHn 86 +t+Cka++++k+ ++w+ ++k+ Hn Pavir.8NG247600.1.p 206 HTDCKARMVIKLI-ADRWHppLKKFLRSHN 234 ************9.6777544777777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-14	116	234	IPR004330	FAR1 DNA binding domain
Gene3D	G3DSA:1.10.601.10	3.7E-4	123	269	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MDLNEPPPEF DYDFLDGVNA TPFYGIQDGV NTNPSYCTQP DLVLTLQEKN HVEQQHNANT 60 CAITIQEAAT VTDGVIEQLV EGVLEGVVEE LMEDVWLTPP VPYTGQTFCS KQEARKFYNS 120 YACRIGFSIR TSTTRLSSLT REQNKVQFVC NKEGRGRKQK EEQGAASFEE SNYDEEDSEP 180 DDDNDGSVKK KKLDGGRKRK REKMQHTDCK ARMVIKLIAD RWHPPLKKFL RSHNGIPKEE 240 KDFIALLHGC NLSTSRIMQL MNEFYGSLQL VPYEWLLLRL VC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	202	RKRKREK
2	196	203	RKRKREKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG247600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	6e-68	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2T7D5A3	1e-115	A0A2T7D5A3_9POAL; Uncharacterized protein
STRING	Pavir.J35510.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	5e-07	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Pavir.8NG247600.1.p