PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG253200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 262aa    MW: 28498.7 Da    PI: 7.7989
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG253200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.6e-411793278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                         C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+
  Pavir.8NG253200.2.p 17 CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 93
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-341378IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.5131491IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-391595IPR004333Transcription factor, SBP-box
PfamPF031104.7E-311790IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDWAAASGAP SWGTAACSVD GCRSDLSRCR EYHRRHRVCE AHSKTPVVVV GGQEQRFCQQ  60
CSRFHMLSEF DEGKRSCRKR LDGHNRRRRK PQHDLANLGG FFPYHQVNQF EMYPRTIPTA  120
CQDSDDMSLV DPQPPFSISF SRTPKQFPFP HDGGSLLSAS RHGHFLVQDG NHTGSSACSH  180
DLSGTLGPEC ALSLLSSSLH HPSPAGHAQV ASALSRIAST SQQVAATPVT TAFASGGSHH  240
VFVPDAALED PSQALPFPWQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271190584squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17390KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG253200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826748.11e-147putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y12e-90SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A3L6PNI81e-156A0A3L6PNI8_PANMI; Putative squamosa promoter-binding-like protein 19
STRINGPavir.Hb01173.1.p1e-155(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-41SBP family protein