PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG253200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 197aa    MW: 21250.6 Da    PI: 7.1872
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG253200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP39.41.6e-122285278
                         TTT--SS--S-STTTT-------S--- CS
                  SBP 52 lsefDeekrsCrrrLakhnerrrkkqa 78
                         lsefDe+krsCr+rL++hn+rrrk+q+
  Pavir.8NG253200.3.p  2 LSEFDEGKRSCRKRLDGHNRRRRKPQH 28
                         99**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.887126IPR004333Transcription factor, SBP-box
PfamPF031103.8E-6225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.02E-10230IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLSEFDEGKR SCRKRLDGHN RRRRKPQHDL ANLGGFFPYH QVNQFEMYPR TIPTACQDSD  60
DMSLVDPQPP FSISFSRTPK QFPFPHDGGS LLSASRHGHF LVQDGNHTGS SACSHDLSGT  120
LGPECALSLL SSSLHHPSPA GHAQVASALS RIASTSQQVA ATPVTTAFAS GGSHHVFVPD  180
AALEDPSQAL PFPWQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1825KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG253200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826748.11e-107putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y14e-52SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A3L6PNI81e-116A0A3L6PNI8_PANMI; Putative squamosa promoter-binding-like protein 19
STRINGPavir.Ha00508.1.p1e-139(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-11SBP family protein