PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG253200.4.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SBP

Protein Properties

Length: 209aa MW: 22851.5 Da PI: 8.386

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG253200.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	47	7e-15	9	40	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+lsefDe+krsCr+rL++hn+rrrk+q+ Pavir.8NG253200.4.p 9 RRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 40 69***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	14.699	1	38	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.6E-5	7	25	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.47E-12	9	42	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-8	9	37	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MEKRMIKSRR FHMLSEFDEG KRSCRKRLDG HNRRRRKPQH DLANLGGFFP YHQVNQFEMY 60 PRTIPTACQD SDDMSLVDPQ PPFSISFSRT PKQFPFPHDG GSLLSASRHG HFLVQDGNHT 120 GSSACSHDLS GTLGPECALS LLSSSLHHPS PAGHAQVASA LSRIASTSQQ VAATPVTTAF 180 ASGGSHHVFV PDAALEDPSQ ALPFPWQQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	37	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG253200.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826748.1	1e-109	putative squamosa promoter-binding-like protein 19
Swissprot	Q2R3Y1	1e-54	SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBL	A0A3L6PNI8	1e-119	A0A3L6PNI8_PANMI; Putative squamosa promoter-binding-like protein 19
STRING	Pavir.Ha00508.1.p	1e-149	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	8e-14	SBP family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG253200.4.p