PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG275300.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 523aa MW: 58560.9 Da PI: 4.6609

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG275300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	274	297	2	23
EETTTT.EEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCg.ksFsrksnLkrHirt.H 23 Cp+C+ k+F ++ +L +H+ H Pavir.8NG275300.2.p 274 ICPICDrKRFVDSGLLLSHMCGkH 297 7*******************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	2.3E-5	2	37	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:1.25.40.10	2.3E-5	124	181	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04780	2.7E-12	220	316	IPR006865	Domain of unknown function DUF629

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MYAEAEAEFR RALSIPNPSD PALHNAAYGM YEGYEHERDP AFVAERVEEA RERARGSYAR 60 MTVEELVPSA VQRVLEAGKL LGAAEGRKRG KLVAETFPNL ARAQYLHAYM DLEFVRSLDP 120 AIDKRPFLRR TLTVADRLAR AFPRSPVIAC FRAKLLFILG EYDAAERECR RALDMKEPDD 180 PQLDCIPVGS ISGENLGARL VSLACEFHEL INKILMVAAD YWDSMSGERR HDSFLRVRSD 240 VLQDEYSKVD PLCAFTMSDV RSFVREHKSW KFWICPICDR KRFVDSGLLL SHMCGKHPRA 300 VLPRLQSLLD QALSSEASEE GGFLDGFAEA LPRIQELWHN FLKASMLDYR GVILELARSF 360 LWRELKKCMT EDPQLAAKRI SATDIDAIFT TEAEPSHAEG DHETGGNEQP SQADGALIVS 420 EDHKESKVPI EHGESSETPA NNTELTDLVT SVAESGNDLY ATLDKLDIDP KINENNQESE 480 FQVEGESSEA TVTNMADPAT SMAESGNDLD VKLENLQINR NF*

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MYAEAEAEFR RALSIPNPSD PALHNAAYGM YEGYEHERDP AFVAERVEEA RERARGSYAR  60
MTVEELVPSA VQRVLEAGKL LGAAEGRKRG KLVAETFPNL ARAQYLHAYM DLEFVRSLDP  120
AIDKRPFLRR TLTVADRLAR AFPRSPVIAC FRAKLLFILG EYDAAERECR RALDMKEPDD  180
PQLDCIPVGS ISGENLGARL VSLACEFHEL INKILMVAAD YWDSMSGERR HDSFLRVRSD  240
VLQDEYSKVD PLCAFTMSDV RSFVREHKSW KFWICPICDR KRFVDSGLLL SHMCGKHPRA  300
VLPRLQSLLD QALSSEASEE GGFLDGFAEA LPRIQELWHN FLKASMLDYR GVILELARSF  360
LWRELKKCMT EDPQLAAKRI SATDIDAIFT TEAEPSHAEG DHETGGNEQP SQADGALIVS  420
EDHKESKVPI EHGESSETPA NNTELTDLVT SVAESGNDLY ATLDKLDIDP KINENNQESE  480
FQVEGESSEA TVTNMADPAT SMAESGNDLD VKLENLQINR NF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG275300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791203.1	0.0	uncharacterized protein LOC112872314
TrEMBL	A0A2S3IF76	0.0	A0A2S3IF76_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CPX3	0.0	A0A2T7CPX3_9POAL; Uncharacterized protein
STRING	Pavir.J27150.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.8NG275300.2.p