PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG287600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 386aa MW: 43159.5 Da PI: 5.3272

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG287600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.1e-21	136	232	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn+YA+++ Fs+r+++s++sk+ +e tk+ +vC+k g +++ek + +++rr+ ++rt+C ++ v+k++ g+wev ++ Pavir.8NG287600.1.p 136 DYYNSYARHTCFSIRIDTSRESKKANEKTKYIYVCQKAGVSKKEKVAddgpitekkIVRQRRRDYVDRTHCPTRMIVRKTSPGHWEVVNF 225 69**************************************999999999888999999********************** PP FAR1 82 eleHnHe 88 e eHnHe Pavir.8NG287600.1.p 226 EREHNHE 232 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-19	136	232	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MTCSGVFDLN SAPLQEHDFL AAPSDLELQQ VSGAAFPPMC VAGGAGAHVS SSNLTLPVIS 60 NETLHLSSNS APPELATQQL SNSASKVLPV ESGGVTVPTA ETTADGVDVE DGVEVLSTPQ 120 EPFVGMSFNT SDAAKDYYNS YARHTCFSIR IDTSRESKKA NEKTKYIYVC QKAGVSKKEK 180 VADDGPITEK KIVRQRRRDY VDRTHCPTRM IVRKTSPGHW EVVNFEREHN HERLRKFSLT 240 KYLKSHRDIP AEEKEFIKLL HGCCITTTRA YQIMAELYGG IENCPYTEGD AKNLRVEYRA 300 KYRGKDVKAT LEYFEELKKE DPEFYYSYTL DEFDGVENLF WVDGAAMITY ELYSDCLSFD 360 TTYLTNAYNM PCAPFIGIDR NGITI*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MTCSGVFDLN SAPLQEHDFL AAPSDLELQQ VSGAAFPPMC VAGGAGAHVS SSNLTLPVIS  60
NETLHLSSNS APPELATQQL SNSASKVLPV ESGGVTVPTA ETTADGVDVE DGVEVLSTPQ  120
EPFVGMSFNT SDAAKDYYNS YARHTCFSIR IDTSRESKKA NEKTKYIYVC QKAGVSKKEK  180
VADDGPITEK KIVRQRRRDY VDRTHCPTRM IVRKTSPGHW EVVNFEREHN HERLRKFSLT  240
KYLKSHRDIP AEEKEFIKLL HGCCITTTRA YQIMAELYGG IENCPYTEGD AKNLRVEYRA  300
KYRGKDVKAT LEYFEELKKE DPEFYYSYTL DEFDGVENLF WVDGAAMITY ELYSDCLSFD  360
TTYLTNAYNM PCAPFIGIDR NGITI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG287600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6TA85	0.0	A0A3L6TA85_PANMI; Uncharacterized protein
STRING	Pavir.J18884.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-37	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8NG287600.1.p