PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG308400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 156aa    MW: 16498.7 Da    PI: 10.759
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG308400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000664567123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cg++F +   L  H  +H
  Pavir.8NG308400.1.p 45 FRCRTCGRRFATFQALGGHRTSH 67
                         89**********99998888777 PP
2zf-C2H216.23e-0594116123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg++F++   L  H+r+H
  Pavir.8NG308400.1.p  94 HRCNACGMVFPTGQALGGHMRRH 116
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-54371No hitNo description
PfamPF139122.2E-94468IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8244572IPR007087Zinc finger, C2H2
SMARTSM003550.234567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576672.83E-592118No hitNo description
PfamPF139126.6E-1193117IPR007087Zinc finger, C2H2
PROSITE profilePS501579.30794116IPR007087Zinc finger, C2H2
SMARTSM003550.01194116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MATTTARSST VDLLLYLSLS TASKVIAKAG GGRHHHRADR ADGAFRCRTC GRRFATFQAL  60
GGHRTSHNRP RVRADGLDLL LGARPGKGAA GDVHRCNACG MVFPTGQALG GHMRRHRTAV  120
FDVADAAVPE TTTTTSFSGS DDDEGQLPIQ LIKFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG308400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828381.12e-83zinc finger protein ZAT11-like
TrEMBLA0A2S3IFT94e-82A0A2S3IFT9_9POAL; Uncharacterized protein
STRINGPavir.Ha00194.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.14e-25C2H2 family protein