PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG311000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 197aa    MW: 21942.9 Da    PI: 10.0653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG311000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.6e-153483355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr ++ +g ++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Pavir.8NG311000.1.p 34 FIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSTRG 83
                         57***999.**********43343..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.3E-283397IPR001471AP2/ERF domain
PROSITE profilePS5103220.7843391IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-203493IPR016177DNA-binding domain
CDDcd000182.39E-143492No hitNo description
Gene3DG3DSA:3.30.730.106.9E-273492IPR001471AP2/ERF domain
PfamPF008473.3E-103483IPR001471AP2/ERF domain
PRINTSPR003672.4E-73445IPR001471AP2/ERF domain
PRINTSPR003672.4E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVWIGPNTVD RQLRQPDDDD DAASPGEKER SHAFIGVRPR PWGTFAAEIR DSTRRGARVW  60
LGTFDTPEAA ALAYDQAAFS TRGAAAVLNF PVERVREVRG LPLLALKRRH SKRRHKRRKN  120
LSRPVTTTSS KDLINSKQQR QRPPRHCSDV PSLPGVAMAA MAQHHVTVRC GVLELEDLCA  180
DYLDELLRAS CELTAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2334931574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106116KRRHSKRRHKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.252292e-49root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG311000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276838e-58KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826606.12e-78ethylene-responsive transcription factor ERF094-like
TrEMBLA0A2T7CR871e-78A0A2T7CR87_9POAL; Uncharacterized protein
STRINGPavir.Ha00304.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.14e-30ethylene-responsive element binding factor 15