PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG332400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 258aa    MW: 28611.2 Da    PI: 5.4458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG332400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-111832231055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.8NG332400.1.p 183 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 223
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-15170237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-15171236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-12182227No hitNo description
PfamPF000105.2E-9183223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEAKGASIWS EESEMIAHLQ SMFWNSSDAD VSLSSPNSST SSCIEPGTLP TALFLPLIEK  60
ESYDTAPLQN AATDWCFDHQ SEAFASIDNA VTGDKRALLM DERRKKSKNS NKKPRIIAPV  120
LMTTSSALDD KANTELINLS SYWCCSSEDD SIGVCEESVV LKESSSSRGR SRSSKNSQSL  180
YAKKRRERIN EKLKTLQQLI PNGTKVDMST MLEEAVQYVK FLQLQIKLLS SDETWMYAPL  240
AYNHSSIDIN LNSSAKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG332400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826894.11e-150transcription factor bHLH139-like isoform X1
TrEMBLA0A2S3IFD11e-149A0A2S3IFD1_9POAL; Uncharacterized protein
STRINGPavir.Ha00126.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-35bHLH family protein