PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG332400.4.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 196aa MW: 21992.9 Da PI: 8.6056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG332400.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	121	161	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ +L++l+P+ +K++ +++Le+Av+Y+k Lq Pavir.8NG332400.4.p 121 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 161 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-15	108	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-15	109	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.472	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.18E-12	120	165	No hit	No description
Pfam	PF00010	3.3E-9	121	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MNLDNLQNAA TDWCFDHQSE AFASIDNAVT GDKRALLMDE RRKKSKNSNK KPRIIAPVLM 60 TTSSALDDKA NTELINLSSY WCCSSEDDSI GVCEESVVLK ESSSSRGRSR SSKNSQSLYA 120 KKRRERINEK LKTLQQLIPN GTKVDMSTML EEAVQYVKFL QLQIKLLSSD ETWMYAPLAY 180 NHSSIDINLN SSAKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG332400.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826894.1	1e-111	transcription factor bHLH139-like isoform X1
Swissprot	Q7XHI9	2e-37	BH084_ARATH; Transcription factor bHLH84
TrEMBL	A0A2S3IFD1	1e-109	A0A2S3IFD1_9POAL; Uncharacterized protein
STRING	Pavir.Ha00126.1.p	1e-136	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	1e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG332400.4.p