PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG018900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 377aa    MW: 40334.4 Da    PI: 11.297
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG018900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.23.1e-12268359899
                NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                          +q   a d+   ++P+ar++++++a++   + s ea  l+ ka elf+ +++  ++ +a + +++++   ++++av + + f+fl d vp
  Pavir.9KG018900.1.p 268 EQKAAAVDMGSCSFPMARVRQLMRAEDATIRASNEAVFLINKASELFLGKFAEDAYRNALKDRKKSITYDNLSTAVCSQKGFKFLSDFVP 357
                          566778899999*****************************************************************************9 PP

                NF-YC  98 rd 99 
                          + 
  Pavir.9KG018900.1.p 358 QR 359
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.52E-16265358IPR009072Histone-fold
PfamPF008082.8E-12280343IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.9E-20281358IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAGKKTTPVK PAPPSTQRNG GATPGSKGRP KQASGESSAA SAKARSAPKP RKITKEKPAA  60
AKRKRDKPEP QEGGKRKKQQ ASGDAATPAK KRKKGDGPEP KPTKKKQQAG KPEKPATPSK  120
KQKSSGKPKK AATPVKKQQS PGKPEKPATP SKKQQSSGKP EKPATPVKKQ QSPGKPKKPL  180
TPAKKQKSTG KAEKPTPKKQ QQSPGKARKS PAPATTPTKK KQAKSEKPTP TKRKRGDDES  240
QNEARSPKRD SGDGDAPAST PVKKKRKEQK AAAVDMGSCS FPMARVRQLM RAEDATIRAS  300
NEAVFLINKA SELFLGKFAE DAYRNALKDR KKSITYDNLS TAVCSQKGFK FLSDFVPQRV  360
TAEDALKVTG LQQIVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894AKKRKKG
28993KKRKK
3218234KKKQAKSEKPTPTKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.287020.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG018900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792625.10.0muscle M-line assembly protein unc-89-like isoform X1
TrEMBLA0A2T7BYG10.0A0A2T7BYG1_9POAL; Uncharacterized protein
STRINGPavir.Ib04487.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-25nuclear factor Y, subunit C10