PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG021500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 400aa    MW: 42211.2 Da    PI: 6.6372
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG021500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-31178236259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  Pavir.9KG021500.1.p 178 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 236
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247172238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30175238IPR003657WRKY domain
SuperFamilySSF1182901.83E-26176238IPR003657WRKY domain
SMARTSM007744.3E-38177237IPR003657WRKY domain
PfamPF031069.1E-26179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDMAAAVAGA AAQGDLADVV ARAGAMAAAP PSTTPSFAAA ADHMPSSAAM AARQIMVVPC  60
EAAEPRPVMR SIAACSDTSM LEAPSMVDPY LSASATPRGA YWLPPPQLAV QISQHACYGR  120
DVAMAGAAND VDGEEAMRIS SPAAHQIMKR KNEVKKVVCI PALPPTSSRP GGGEVIPSDL  180
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCM ARKQVERSRS DPNMLVITYT AEHNHPWPMQ  240
RNVLAGYSRP HTTNTSSSSS SSSCKKKNSC RVDPTTSSSS TSSKNAAANY YSDEHNAVAA  300
GGNLECQQTT MTDMMEEGNA AAAAAAAGSH HVAYYTIAGA LDEEEAVAMH HQPIQTAADE  360
VFVELEELEP SSSSNPAVNA NIYCSSSRGV SSYDQWHKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23151238279Disease resistance protein RRS1
5w3x_D2e-23151238279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG021500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687531e-120BT068753.1 Zea mays full-length cDNA clone ZM_BFb0381C04 mRNA, complete cds.
GenBankEU9648151e-120EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds.
GenBankKJ7276131e-120KJ727613.1 Zea mays clone pUT5524 WRKY transcription factor (WRKY10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980994.11e-158probable WRKY transcription factor 14
TrEMBLA0A3L6SG530.0A0A3L6SG53_PANMI; Putative WRKY transcription factor 14
STRINGPavir.Ib04470.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-54WRKY DNA-binding protein 35