PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG024500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 243aa    MW: 26177.3 Da    PI: 8.4894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG024500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1895146256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g+
  Pavir.9KG024500.1.p  95 VYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFAMRGA 146
                          69*******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-2295155IPR016177DNA-binding domain
PfamPF008473.0E-1395145IPR001471AP2/ERF domain
SMARTSM003801.1E-3595159IPR001471AP2/ERF domain
PROSITE profilePS5103223.07795153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-3095154IPR001471AP2/ERF domain
PRINTSPR003673.9E-1096107IPR001471AP2/ERF domain
CDDcd000181.61E-1396130No hitNo description
PRINTSPR003673.9E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MYGERMSSQM SMSSGGSPPA VQVQLSTGIV GFLARRAMSS TQRSMSCSQQ QERPLDSPGS  60
SSSSVGSAPW SSTSATALEV ELEQRPPESE EERAVYRGVR KRPWGKFAAE IRDSTRNGVR  120
VWLGTFDSAE AAALAYDQAA FAMRGAAAVL NFPVERVRQS LEGMGMLEAC GGGGSPSPVV  180
ALKRRHSNSM RVRQPARRRG RSRGEVMELE DLGTEYLEAL LGATAAEEQT ETSSWCRSHH  240
SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-27921551174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.252293e-58root
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG024500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699806e-84BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165322.19e-66ethylene-responsive transcription factor 1B-like
RefseqXP_025798238.16e-66LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y95e-52ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3L6TW313e-75A0A3L6TW31_PANMI; Ethylene-responsive transcription factor 1B-like
STRINGPavir.J16149.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-28ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]