PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG031700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 370aa    MW: 39146.9 Da    PI: 8.3844
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG031700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP165.32.9e-511112671136
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                          aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ +  +++sec e++sss s++ + ++ 
  Pavir.9KG031700.1.p 111 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMTD--DASSECvEDGSSSLSVDGKPNQa 198
                          589**************************************************************..66667999999999998555556 PP

                  TCP  89 .....................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                               k +k+a+ +k+++ks +++  ++ke+rakar+rarert+ek+r+++++
  Pavir.9KG031700.1.p 199 elgllgggdqqpkgnggkkpaKPRKAATAPKPPRKSGNAHPVPDKETRAKARERARERTKEKHRMRWVK 267
                          7888888888889999999966666666999999****9***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-45113263IPR005333Transcription factor, TCP
PROSITE profilePS5136935.255114172IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.593243260IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MFPFCDSSSP MDLPLYQQLQ LSPPSPKPGQ SSTSSFFYYP CSPPFAAADA SFHLSYLLGS  60
AAAAGATPVI DSPSPELPLM EQAPAPATEL DASACANAQG AGVSLDRASA AAARKDRHSK  120
ICTAGGMRDR RMRLSLDVAR KFFALQDMLG FDKASKTVQW LLNTSKAAIQ EIMTDDASSE  180
CVEDGSSSLS VDGKPNQAEL GLLGGGDQQP KGNGGKKPAK PRKAATAPKP PRKSGNAHPV  240
PDKETRAKAR ERARERTKEK HRMRWVKLAS AIDVEAAAAS VARDSRPSSM PNNLNHHSSS  300
NMAACAAAEL EERCSSTLNN GGRMQEITGA SDVIIAFGGN GGYGGAGNYY CQEQWDLGGV  360
VFQQNSRFY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in axillary inflorescence primordia, immature internodes below these primordia, and immature husk surrounding these primordia. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:9087405}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG031700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432600.0AC243260.1 Panicum virgatum clone PV_ABa103-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796975.10.0transcription factor TEOSINTE BRANCHED 1-like
SwissprotQ93WI21e-164TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A3L6TGV00.0A0A3L6TGV0_PANMI; Transcription factor TEOSINTE BRANCHED 1-like
STRINGPavir.Ib04362.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-20TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]